國家衛生研究院 NHRI:Item 3990099045/5425
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    Please use this identifier to cite or link to this item: http://ir.nhri.org.tw/handle/3990099045/5425


    Title: An experimentally validated genome-scale metabolic reconstruction of Klebsiella pneumoniae MGH 78578, iYL1228
    Authors: Liao, YC;Huang, TW;Chen, FC;Charusanti, P;Hong, JS;Chang, HY;Tsai, SF;Palsson, BO;Hsiung, CA
    Contributors: Division of Biostatistics and Bioinformatics;Division of Molecular and Genomic Medicine
    Abstract: Klebsiella pneumoniae is a gram negative bacterium of the Enterobacteriaceae family that possesses diverse metabolic capabilities: many strains are leading causes of hospital-acquired infections that are often refractory to multiple antibiotics, yet other strains are metabolically engineered and used for production of commercially-valuable chemicals. To study its metabolism, we constructed a genome-scale metabolic model (iYL1228) for strain MGH 78578, experimentally determined its biomass composition, experimentally determined its ability to grow on a broad range of carbon, nitrogen, phosphorus and sulfur sources, and assessed the ability of the model to accurately simulate growth versus no growth on these substrates. The model contains 1228 genes encoding 1188 enzymes that catalyze 1970 reactions and accurately simulates growth on 84% of the substrates tested. Furthermore, quantitative comparison of growth rates between the model and experimental data for nine of the substrates also showed good agreement. The genome-scale metabolic reconstruction for K. pneumoniae presented here thus provides an experimentally-validated in silico platform for further studies of this important industrial and biomedical organism.
    Date: 2011-04
    Relation: Journal of Bacteriology. 2011 Apr;193(7):1710-1717.
    Link to: http://dx.doi.org/10.1128/jb.01218-10
    JIF/Ranking 2023: http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=NHRI&SrcApp=NHRI_IR&KeyISSN=0021-9193&DestApp=IC2JCR
    Cited Times(WOS): https://www.webofscience.com/wos/woscc/full-record/WOS:000288314400023
    Cited Times(Scopus): http://www.scopus.com/inward/record.url?partnerID=HzOxMe3b&scp=79952789318
    Appears in Collections:[Feng-Chi Chen] Periodical Articles
    [Chao A. Hsiung] Periodical Articles
    [Shih-Feng Tsai] Periodical Articles
    [Yu-Chieh Liao] Periodical Articles

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